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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jzmATPCircadian clock protein kinase KaiC2.7.11.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3jzmATPCircadian clock protein kinase KaiC2.7.11.11.000
3dvlATPCircadian clock protein kinase KaiC2.7.11.10.556
3k0fATPCircadian clock protein kinase KaiC2.7.11.10.535
3k0aATPCircadian clock protein kinase KaiC2.7.11.10.484
4o0mATPCircadian clock protein kinase KaiC2.7.11.10.482