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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3igvB80Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3igvB80Genome polyprotein2.7.7.481.000
3br9DEYGenome polyprotein2.7.7.480.607
3u4r08FGenome polyprotein2.7.7.480.594
3bsc2PDGenome polyprotein2.7.7.480.587
3hkwIX6Genome polyprotein2.7.7.480.558
4mk928RGenome polyprotein2.7.7.480.551
4mka2AYGenome polyprotein2.7.7.480.543
4mkb28VGenome polyprotein2.7.7.480.527
3u4o08EGenome polyprotein2.7.7.480.512
2gc8885Polyprotein/0.492
1nb6UTPGenome polyprotein2.7.7.480.489
3ska053Genome polyprotein2.7.7.480.487
3uph0C1Genome polyprotein2.7.7.480.468
3g86T18Genome polyprotein2.7.7.480.465
3d28B34Genome polyprotein2.7.7.480.459
3d5m4MSGenome polyprotein2.7.7.480.458
3tyvHI3Genome polyprotein2.7.7.480.452
2giqNN2Genome polyprotein2.7.7.480.450
3csoXNIGenome polyprotein2.7.7.480.446