Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hkyIX6Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3hkyIX6Genome polyprotein2.7.7.481.000
3tyvHI3Genome polyprotein2.7.7.480.618
3g86T18Genome polyprotein2.7.7.480.612
3uph0C1Genome polyprotein2.7.7.480.601
2yoj8Y6Genome polyprotein2.7.7.480.592
3u4o08EGenome polyprotein2.7.7.480.585
4mka2AYGenome polyprotein2.7.7.480.583
2gc8885Polyprotein/0.578
3hkwIX6Genome polyprotein2.7.7.480.578
4mk728OGenome polyprotein2.7.7.480.574
3u4r08FGenome polyprotein2.7.7.480.573
3igvB80Genome polyprotein2.7.7.480.570
4mk928RGenome polyprotein2.7.7.480.569
3gnvXNZGenome polyprotein2.7.7.480.567
3csoXNIGenome polyprotein2.7.7.480.565
2giqNN2Genome polyprotein2.7.7.480.563
3h2lYAKGenome polyprotein2.7.7.480.560
3d5m4MSGenome polyprotein2.7.7.480.550
3bsc2PDGenome polyprotein2.7.7.480.540
3ska053Genome polyprotein2.7.7.480.537
3h59H59Genome polyprotein2.7.7.480.531
4eaw0NQGenome polyprotein2.7.7.480.531
3ske054Genome polyprotein2.7.7.480.530
4mkb28VGenome polyprotein2.7.7.480.529
3d28B34Genome polyprotein2.7.7.480.508
3br9DEYGenome polyprotein2.7.7.480.506
3gynB42Genome polyprotein2.7.7.480.493
3co93MSGenome polyprotein2.7.7.480.444