sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3hbb	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3hbb	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	1.000
3clb	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.572
3qls	NDP	Dihydrofolate reductase	1.5.1.3	0.502
3dg8	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.496
3kjs	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	/	0.491
1dg8	NDP	Dihydrofolate reductase	1.5.1.3	0.488
3tqa	NDP	Dihydrofolate reductase	/	0.483
2h2q	NAP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.481
1j3j	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.471
2w3b	NDP	Dihydrofolate reductase	1.5.1.3	0.466
3irm	1CY	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.463
1j3k	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.460
4kl9	NDP	Dihydrofolate reductase	1.5.1.3	0.456
8dfr	NDP	Dihydrofolate reductase	1.5.1.3	0.455
3inv	NDP	Bifunctional dihydrofolate reductase-thymidylate synthase	1.5.1.3	0.448