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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3h2lYAKGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3h2lYAKGenome polyprotein2.7.7.481.000
3d5m4MSGenome polyprotein2.7.7.480.672
3h59H59Genome polyprotein2.7.7.480.627
4mk728OGenome polyprotein2.7.7.480.606
3d28B34Genome polyprotein2.7.7.480.580
4mk928RGenome polyprotein2.7.7.480.576
3g86T18Genome polyprotein2.7.7.480.566
3hkwIX6Genome polyprotein2.7.7.480.560
3u4r08FGenome polyprotein2.7.7.480.554
4eaw0NQGenome polyprotein2.7.7.480.554
3gnvXNZGenome polyprotein2.7.7.480.553
3ska053Genome polyprotein2.7.7.480.545
3hkyIX6Genome polyprotein2.7.7.480.537
3igvB80Genome polyprotein2.7.7.480.537
3csoXNIGenome polyprotein2.7.7.480.536
3uph0C1Genome polyprotein2.7.7.480.527
2yoj8Y6Genome polyprotein2.7.7.480.507
3u4o08EGenome polyprotein2.7.7.480.502
4mka2AYGenome polyprotein2.7.7.480.495
3ske054Genome polyprotein2.7.7.480.474
3upi0C2Genome polyprotein2.7.7.480.466
4mkb28VGenome polyprotein2.7.7.480.466
3bsa1PDGenome polyprotein2.7.7.480.448