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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g86T18Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3g86T18Genome polyprotein2.7.7.481.000
4mk928RGenome polyprotein2.7.7.480.599
2giqNN2Genome polyprotein2.7.7.480.581
2gc8885Polyprotein/0.576
3bsc2PDGenome polyprotein2.7.7.480.575
3tyvHI3Genome polyprotein2.7.7.480.570
3u4r08FGenome polyprotein2.7.7.480.568
4mk728OGenome polyprotein2.7.7.480.564
3igvB80Genome polyprotein2.7.7.480.562
4mka2AYGenome polyprotein2.7.7.480.553
4mkb28VGenome polyprotein2.7.7.480.544
3d28B34Genome polyprotein2.7.7.480.542
3u4o08EGenome polyprotein2.7.7.480.541
3d5m4MSGenome polyprotein2.7.7.480.533
3hkyIX6Genome polyprotein2.7.7.480.533
3hkwIX6Genome polyprotein2.7.7.480.529
3uph0C1Genome polyprotein2.7.7.480.526
3csoXNIGenome polyprotein2.7.7.480.519
3gnvXNZGenome polyprotein2.7.7.480.519
3h2lYAKGenome polyprotein2.7.7.480.513
3br9DEYGenome polyprotein2.7.7.480.501
3ska053Genome polyprotein2.7.7.480.501
3gynB42Genome polyprotein2.7.7.480.493
3h59H59Genome polyprotein2.7.7.480.493
2yoj8Y6Genome polyprotein2.7.7.480.484
4eaw0NQGenome polyprotein2.7.7.480.466
3ske054Genome polyprotein2.7.7.480.464
3h5uH5UGenome polyprotein2.7.7.480.448