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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3g0cRUFDipeptidyl peptidase 4

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3g0cRUFDipeptidyl peptidase 4/1.000
4a5sN7FDipeptidyl peptidase 4/0.593
3g0bT22Dipeptidyl peptidase 4/0.549
2f3rG5PGuanylate kinase2.7.4.80.449
3vjkM51Dipeptidyl peptidase 4/0.447
3h3r14HCollagen type IV alpha-3-binding protein/0.445
3p67FMNPentaerythritol tetranitrate reductase/0.443
2r8pT6FTransketolase 1/0.441