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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f9mMRKGlucokinase2.7.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3f9mMRKGlucokinase2.7.1.21.000
3vey0H5Glucokinase2.7.1.20.594
4mleVO1Glucokinase2.7.1.20.563
3fr0AJBGlucokinase2.7.1.20.544
3h1vTK1Glucokinase2.7.1.20.535
3a0iAJIGlucokinase2.7.1.20.527
3id8MRKGlucokinase2.7.1.20.525
4mlhVO2Glucokinase2.7.1.20.479
1v4sMRKGlucokinase2.7.1.20.474
4l3q926Glucokinase2.7.1.20.473
1xuoLA1Integrin alpha-L/0.440
4japCOAAlpha-pyrone synthesis polyketide synthase-like Pks112.3.10.440
4jaqCOAAlpha-pyrone synthesis polyketide synthase-like Pks112.3.10.440