scPDB - 4jap entry

Protein Data Bank Entry:

PDB ID : 4jap

Resolution :1.830 Å

Experimental Method : X-ray

Deposition Date : 2013-02-19

Activity from ChEMBL: What is pChEMBL ?

	Min	Mean	Median	Standard Deviation	Max	Count
pChEMBL:

List of CHEMBLId :

Binding Site :

Uniprot Annotation

Name:	Alpha-pyrone synthesis polyketide synthase-like Pks11
ID:	PKS11_MYCTU
AC:	P9WPF3
Organism:	Mycobacterium tuberculosis
Reign:	Bacteria
TaxID:	83332
EC Number:	2.3.1

Chains:

Chain Name:	Percentage of Residues within binding site
C	100 %

Ligand binding site composition:

B-Factor:	57.745
Number of residues:	32
Including
Standard Amino Acids:	32
Non Standard Amino Acids:	0
Water Molecules:	0
Cofactors:
Metals:

Cavity properties

Ligandability	Volume (Å3)
1.987	712.125

% Hydrophobic	% Polar
70.62	29.38
According to VolSite

Ligand :

HET Code:	COA
Formula:	C21H32N7O16P3S
Molecular weight:	763.502 g/mol
DrugBank ID:	DB01992
Buried Surface Area:	46.01 %
Polar Surface area:	426.11 Å2

Number of
H-Bond Acceptors:	21
H-Bond Donors:	6
Rings:	3
Aromatic rings:	2
Anionic atoms:	4
Cationic atoms:	0
Rule of Five Violation:	3
Rotatable Bonds:	18

Mass center Coordinates

X	Y	Z
38.9326	-23.243	89.38

Binding mode :

What is Poseview ?

2D View
3D View

Image generated by PoseView

Protein

Binding Site

Ligand

Interaction pattern

hydrophobic (CA)

aromatic (CZ)

hydrogen bond acceptor (O)

hydrogen bond acceptor/donor (OG)

hydrogen bond donor (N)

positively ionized (NZ)

negatively ionized (OD1)

metal (ZN)

Legend:

Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand

Image generated using PoseView by BioSolveIT

Ligand	Protein		Interaction
Atom	Atom	Residue	Distance (Å)	Angle (°)	Type
CCP	CD1	LEU- 41	4.31	0	Hydrophobic	false
CCP	CB	ALA- 44	4.3	0	Hydrophobic	false
CEP	CB	ALA- 45	4.46	0	Hydrophobic	false
C2P	SG	CYS- 138	3.84	0	Hydrophobic	false
C1B	CG1	VAL- 179	4.23	0	Hydrophobic	false
N1A	OG	SER- 180	2.9	146.57	H-Bond (Protein Donor)	false
CDP	CG1	VAL- 183	3.4	0	Hydrophobic	false
CDP	CD1	LEU- 187	4.03	0	Hydrophobic	false
CEP	CD2	LEU- 187	4.26	0	Hydrophobic	false
C6P	CD1	LEU- 187	3.72	0	Hydrophobic	false
C2P	SD	MET- 228	4.09	0	Hydrophobic	false
S1P	CE	MET- 228	4.1	0	Hydrophobic	false
N6A	O	LEU- 241	2.98	135.46	H-Bond (Ligand Donor)	false
C6P	CD1	LEU- 241	3.83	0	Hydrophobic	false
N4P	O	GLY- 279	3.26	152.98	H-Bond (Ligand Donor)	false
CEP	CG	PRO- 281	4.36	0	Hydrophobic	false
O1A	NZ	LYS- 282	3.82	0	Ionic (Protein Cationic)	false
O2A	NZ	LYS- 282	3.59	0	Ionic (Protein Cationic)	false
CAP	CG	LYS- 282	3.75	0	Hydrophobic	false
O9P	N	LYS- 282	3.32	152.24	H-Bond (Protein Donor)	false
C6P	CG2	VAL- 283	4.41	0	Hydrophobic	false
S1P	SD	MET- 339	3.71	0	Hydrophobic	false