sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3f0g	C5P	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
3f0g	C5P	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	/	1.000
1gx1	CDP	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	4.6.1.12	0.544
1h48	C5P	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	4.6.1.12	0.538
1h48	CDI	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	4.6.1.12	0.535
3k14	535	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	/	0.518
3jvh	HHV	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	/	0.517
1h47	C5P	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	4.6.1.12	0.505
1iv4	C5P	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	4.6.1.12	0.490
4c8e	C5P	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	/	0.481
3t80	CTN	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	4.6.1.12	0.467
2cke	IQU	Death-associated protein kinase 2	/	0.461
4c8g	C5P	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	/	0.455
3p0z	CTN	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	/	0.453
1tj1	FAD	Bifunctional protein PutA	1.5.5.2	0.443