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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3emlZMAAdenosine receptor A2a

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3emlZMAAdenosine receptor A2a/1.000
5k2cZMAAdenosine receptor A2a/0.627
5iua6DXAdenosine receptor A2a/0.625
5jtbZMAAdenosine receptor A2a/0.621
5uviZMAAdenosine receptor A2a/0.620
5k2bZMAAdenosine receptor A2a/0.612
5k2aZMAAdenosine receptor A2a/0.612
5k2dZMAAdenosine receptor A2a/0.611
4eiyZMAAdenosine receptor A2a/0.593
5iu86DZAdenosine receptor A2a/0.587
5iu4ZMAAdenosine receptor A2a/0.572
5iubCLRAdenosine receptor A2a/0.566
2ydvNECAdenosine receptor A2a/0.513
3qakUKAAdenosine receptor A2a/0.510
5g53NECAdenosine receptor A2a/0.506
3vg9ZMAAdenosine receptor A2a/0.502
2ydoADNAdenosine receptor A2a/0.495
3uzcT4EAdenosine receptor A2a/0.485
4ug2NGIAdenosine receptor A2a/0.466
3reyXACAdenosine receptor A2a/0.466
4uhrNGIAdenosine receptor A2a/0.462
3pwhZMAAdenosine receptor A2a/0.460
2z3uCRRCytochrome P450/0.443
3a1l2CCCytochrome P450/0.443
2bxoOPBSerum albumin/0.441
2po7CHDFerrochelatase, mitochondrial4.99.1.10.440