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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3d5m4MSGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3d5m4MSGenome polyprotein2.7.7.481.000
3h59H59Genome polyprotein2.7.7.480.627
3h2lYAKGenome polyprotein2.7.7.480.598
3d28B34Genome polyprotein2.7.7.480.569
4mk728OGenome polyprotein2.7.7.480.559
4mk928RGenome polyprotein2.7.7.480.547
3gnvXNZGenome polyprotein2.7.7.480.544
3hkwIX6Genome polyprotein2.7.7.480.539
3ska053Genome polyprotein2.7.7.480.534
4eaw0NQGenome polyprotein2.7.7.480.520
3uph0C1Genome polyprotein2.7.7.480.511
3igvB80Genome polyprotein2.7.7.480.509
2gc8885Polyprotein/0.507
3g86T18Genome polyprotein2.7.7.480.500
3csoXNIGenome polyprotein2.7.7.480.492
2yoj8Y6Genome polyprotein2.7.7.480.466
3upi0C2Genome polyprotein2.7.7.480.453
3hkyIX6Genome polyprotein2.7.7.480.452
3bsa1PDGenome polyprotein2.7.7.480.451