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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cvuFADRE11660p

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3cvuFADRE11660p/1.000
2wq6FADRE11660p/0.646
3cvyFADRE11660p/0.638
4djaFAD(6-4) photolyase/0.562
1np7FADCryptochrome DASH/0.552
4jzyFADCryptochrome-1/0.549
2j4dFADCryptochrome DASH, chloroplastic/mitochondrial/0.548
2ijgFADCryptochrome DASH, chloroplastic/mitochondrial/0.531
2vtbFADCryptochrome DASH, chloroplastic/mitochondrial/0.531
4i6gFADCryptochrome-2/0.530
3zxsFADDeoxyribodipyrimidine photolyase-related protein/0.519
1tezFADDeoxyribodipyrimidine photo-lyase4.1.99.30.515
1owmFADDeoxyribodipyrimidine photo-lyase4.1.99.30.513
1qnfFADDeoxyribodipyrimidine photo-lyase4.1.99.30.510
1owlFADDeoxyribodipyrimidine photo-lyase4.1.99.30.508
1ownFADDeoxyribodipyrimidine photo-lyase4.1.99.30.499
1owoFADDeoxyribodipyrimidine photo-lyase4.1.99.30.490
2j07FADDeoxyribodipyrimidine photo-lyase4.1.99.30.490
2j08FADDeoxyribodipyrimidine photo-lyase4.1.99.30.489
2j09FADDeoxyribodipyrimidine photo-lyase4.1.99.30.487
4mlp2CXCryptochrome-2/0.486
1owpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.479
1dnpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.478
1u3dFADCryptochrome-1/0.478
3umvFADDeoxyribodipyrimidine photo-lyase4.1.99.30.471
1u3cFADCryptochrome-1/0.445