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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3cntFADPolyamine oxidase FMS1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3cntFADPolyamine oxidase FMS1/1.000
4echFADPolyamine oxidase FMS1/0.622
1xpqFADPolyamine oxidase FMS1/0.584
3cndFADPolyamine oxidase FMS1/0.573
3cn8FADPolyamine oxidase FMS1/0.570
5l3dFADLysine-specific histone demethylase 1A10.562
4fwjFADLysine-specific histone demethylase 1B10.525
2yg7FADPutrescine oxidase/0.518
2uxxFAJLysine-specific histone demethylase 1A10.514
2babFADPutative aminooxidase/0.505
3rhaFDAPutrescine oxidase/0.496
4i58FADCyclohexylamine Oxidase/0.496
3kpfFADPolyamine oxidase1.5.3.140.495
3zdnFADMonoamine oxidase N1.4.3.40.494
1f8rFADL-amino-acid oxidase1.4.3.20.482
4guuFA9Lysine-specific histone demethylase 1B10.482
3k7tFAD6-hydroxy-L-nicotine oxidase/0.478
2b9xFADPutative aminooxidase/0.472
3qj4FADRenalase/0.469
2bacFADPutative aminooxidase/0.467
2ba9FADPutative aminooxidase/0.459
1tdnFADL-amino-acid oxidase1.4.3.20.458
2jb1FADL-amino acid oxidase/0.453
1tdkFADL-amino-acid oxidase1.4.3.20.451
3kkjFADRenalase/0.450
2b9yFADPutative aminooxidase/0.449
3kveFADL-amino-acid oxidase/0.449
1d4cFADFumarate reductase flavoprotein subunit1.3.5.40.445
2yr4FADPhenylalanine 2-monooxygenase precursor1.13.12.90.443
1d4dFADFumarate reductase flavoprotein subunit1.3.5.40.442
1tdoFADL-amino-acid oxidase1.4.3.20.441
2jb2FADL-amino acid oxidase/0.441