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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3br9DEYGenome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3br9DEYGenome polyprotein2.7.7.481.000
3igvB80Genome polyprotein2.7.7.480.638
3bsc2PDGenome polyprotein2.7.7.480.591
4mka2AYGenome polyprotein2.7.7.480.589
4mkb28VGenome polyprotein2.7.7.480.589
3u4r08FGenome polyprotein2.7.7.480.587
4mk928RGenome polyprotein2.7.7.480.574
3hkwIX6Genome polyprotein2.7.7.480.556
3d28B34Genome polyprotein2.7.7.480.537
3gynB42Genome polyprotein2.7.7.480.525
3ska053Genome polyprotein2.7.7.480.513
3u4o08EGenome polyprotein2.7.7.480.510
1nb6UTPGenome polyprotein2.7.7.480.493
2gc8885Polyprotein/0.466
2giqNN2Genome polyprotein2.7.7.480.459
2xi3GTPGenome polyprotein2.7.7.480.458
3tyvHI3Genome polyprotein2.7.7.480.454
3g86T18Genome polyprotein2.7.7.480.452
3uph0C1Genome polyprotein2.7.7.480.446