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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bgrT27Gag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
3bgrT27Gag-Pol polyprotein2.7.7.491.000
2zd1T27Gag-Pol polyprotein2.7.7.490.499
3qlhT27Gag-Pol polyprotein2.7.7.490.480
4kfbT27Gag-Pol polyprotein2.7.7.490.476
4i2q1BTGag-Pol polyprotein2.7.7.490.474
4ifvT27Gag-Pol polyprotein2.7.7.490.472
2ze2T27Gag-Pol polyprotein2.7.7.490.451
4id5T27Gag-Pol polyprotein2.7.7.490.451
3is9AC7Gag-Pol polyprotein2.7.7.490.449
4i2pG73Gag-Pol polyprotein2.7.7.490.445