sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2ztu | NAD | D(-)-3-hydroxybutyrate dehydrogenase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2ztu | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 1.000 | |
| 2ztv | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.566 | |
| 3o03 | NAP | Dehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) | / | 0.515 | |
| 1g6k | NAD | Glucose 1-dehydrogenase | 1.1.1.47 | 0.508 | |
| 5b1y | NDP | 3-oxoacyl-[acyl-carrier-protein] reductase | / | 0.486 | |
| 4hp8 | NAP | 2-deoxy-D-gluconate 3-dehydrogenase | / | 0.485 | |
| 4dc0 | NDP | Putative ketoacyl reductase | 1.3.1 | 0.484 | |
| 4eso | NAP | Putative oxidoreductase | / | 0.470 | |
| 1ae1 | NAP | Tropinone reductase 1 | / | 0.469 | |
| 2ag5 | NAD | 3-hydroxybutyrate dehydrogenase type 2 | / | 0.457 | |
| 4dbz | NDP | Putative ketoacyl reductase | 1.3.1 | 0.456 | |
| 4k6f | NAP | Putative Acetoacetyl-CoA reductase | / | 0.452 | |
| 4b79 | NAD | Probable short-chain dehydrogenase | / | 0.446 | |
| 1q6t | 600 | Tyrosine-protein phosphatase non-receptor type 1 | 3.1.3.48 | 0.444 | |
| 2d1y | NAD | Oxidoreductase, short-chain dehydrogenase/reductase family | / | 0.444 | |
| 3tox | NAP | Putative oxidoreductase | / | 0.444 | |
| 4wec | NAD | Short chain dehydrogenase | / | 0.444 |