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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yoj8Y6Genome polyprotein2.7.7.48

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2yoj8Y6Genome polyprotein2.7.7.481.000
3tyvHI3Genome polyprotein2.7.7.480.780
3u4r08FGenome polyprotein2.7.7.480.699
3uph0C1Genome polyprotein2.7.7.480.627
3ske054Genome polyprotein2.7.7.480.599
3h59H59Genome polyprotein2.7.7.480.598
3hkwIX6Genome polyprotein2.7.7.480.592
3u4o08EGenome polyprotein2.7.7.480.586
3hkyIX6Genome polyprotein2.7.7.480.583
3d5m4MSGenome polyprotein2.7.7.480.577
4mk728OGenome polyprotein2.7.7.480.571
2gc8885Polyprotein/0.570
4mk928RGenome polyprotein2.7.7.480.565
3gnvXNZGenome polyprotein2.7.7.480.555
3g86T18Genome polyprotein2.7.7.480.552
2giqNN2Genome polyprotein2.7.7.480.551
4mka2AYGenome polyprotein2.7.7.480.550
3h2lYAKGenome polyprotein2.7.7.480.549
3ska053Genome polyprotein2.7.7.480.544
3br9DEYGenome polyprotein2.7.7.480.528
3d28B34Genome polyprotein2.7.7.480.520
4mkb28VGenome polyprotein2.7.7.480.514
4eaw0NQGenome polyprotein2.7.7.480.500
3gynB42Genome polyprotein2.7.7.480.498
3igvB80Genome polyprotein2.7.7.480.495
3csoXNIGenome polyprotein2.7.7.480.494
3co93MSGenome polyprotein2.7.7.480.454