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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ylzFADPhenylacetone monooxygenase1.14.13.92

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2ylzFADPhenylacetone monooxygenase1.14.13.921.000
1w4xFADPhenylacetone monooxygenase1.14.13.920.645
2ylrFADPhenylacetone monooxygenase1.14.13.920.566
4d03FADPhenylacetone monooxygenase1.14.13.920.563
2ylsFADPhenylacetone monooxygenase1.14.13.920.552
4d04FADPhenylacetone monooxygenase1.14.13.920.519
2ym2FADPhenylacetone monooxygenase1.14.13.920.509
2yltFADPhenylacetone monooxygenase1.14.13.920.506
2ylxFADPhenylacetone monooxygenase1.14.13.920.505
2ylwFADPhenylacetone monooxygenase1.14.13.920.497
4ntdFADThioredoxin reductase/0.451
4opiFDAConserved Archaeal protein/0.449
3dl0AP5Adenylate kinase/0.447
1xe55FEPlasmepsin-23.4.23.390.446
3k4cFADPyranose 2-oxidase/0.442
1xl8152Peroxisomal carnitine O-octanoyltransferase2.3.1.1370.441
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.440
4aosFADSteroid monooxygenase/0.440