sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Cavities are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2yg7 | FAD | Putrescine oxidase |
| PDB ID | HET | Uniprot Name | EC Number | Cavity Similarity |
Align |
|---|---|---|---|---|---|
| 2yg7 | FAD | Putrescine oxidase | / | 1.000 | |
| 3rha | FDA | Putrescine oxidase | / | 0.574 | |
| 3cn8 | FAD | Polyamine oxidase FMS1 | / | 0.540 | |
| 4i58 | FAD | Cyclohexylamine Oxidase | / | 0.540 | |
| 3zdn | FAD | Monoamine oxidase N | 1.4.3.4 | 0.530 | |
| 2yg4 | FAD | Putrescine oxidase | / | 0.527 | |
| 3cnt | FAD | Polyamine oxidase FMS1 | / | 0.518 | |
| 1xpq | FAD | Polyamine oxidase FMS1 | / | 0.501 | |
| 5l3d | FAD | Lysine-specific histone demethylase 1A | 1 | 0.495 | |
| 3k7t | FAD | 6-hydroxy-L-nicotine oxidase | / | 0.492 | |
| 4ech | FAD | Polyamine oxidase FMS1 | / | 0.491 | |
| 4fwj | FAD | Lysine-specific histone demethylase 1B | 1 | 0.477 | |
| 3cnd | FAD | Polyamine oxidase FMS1 | / | 0.466 | |
| 2ba9 | FAD | Putative aminooxidase | / | 0.463 | |
| 4guu | FA9 | Lysine-specific histone demethylase 1B | 1 | 0.453 | |
| 3kpf | FAD | Polyamine oxidase | 1.5.3.14 | 0.446 | |
| 1f8r | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.443 |