Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yg5FADPutrescine oxidase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2yg5FADPutrescine oxidase/1.000
2yg4FADPutrescine oxidase/0.562
2yg3FADPutrescine oxidase/0.533
3zdnFADMonoamine oxidase N1.4.3.40.482
2vvlFADMonoamine oxidase N1.4.3.40.470
3k7mFAD6-hydroxy-L-nicotine oxidase/0.460
4gdpFADPolyamine oxidase FMS1/0.460
3bi2FADPolyamine oxidase FMS1/0.457
2hkoFADLysine-specific histone demethylase 1A10.448