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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2uupLK4UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.9

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2uupLK4UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.91.000
1uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.699
2jfhLK1UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.628
2y67N21UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.619
2vtdLKMUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.598
2vteIK4UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.592
2y66N04UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.584
2uuoLK3UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.576
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.483
3p8iFMNPentaerythritol tetranitrate reductase/0.449
2g25TDKPyruvate dehydrogenase E1 component1.2.4.10.447
2xpc051UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.446
2jh0701Prothrombin3.4.21.50.442