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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qx7NAPEugenol synthase 11.1.1.318

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2qx7NAPEugenol synthase 11.1.1.3181.000
2qw8NAPEugenol synthase 11.1.1.3180.670
2r6jNDPEugenol synthase 11.1.1.3180.663
3c1oNAPEugenol synthase/0.602
3c3xNAPEugenol synthase 11.1.1.3180.556
4bfvZVVPantothenate kinase2.7.1.330.475
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.456
3a1l2CCCytochrome P450/0.451
4bftZVTPantothenate kinase2.7.1.330.451
1fmjRTLRetinol dehydratase/0.450
3tqxPLP2-amino-3-ketobutyrate coenzyme A ligase/0.448
4bfwZVWPantothenate kinase2.7.1.330.448
4fcd0T6cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.448
3f3y4OABile salt sulfotransferase2.8.2.140.447
1x8lOXRRetinol dehydratase/0.446
1xonPILcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.446
1sojIBMcGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.170.445
2geuCOKPantothenate kinase2.7.1.330.444
1y2bDEEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.441
2ociTYCValacyclovir hydrolase3.10.441
4bfxZVXPantothenate kinase2.7.1.330.441
4ajdF04cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.440
4bfsZVSPantothenate kinase2.7.1.330.440