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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qtvGNPSmall COPII coat GTPase SAR13.6.5

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2qtvGNPSmall COPII coat GTPase SAR13.6.51.000
2xh9J01Uncharacterized protein/0.480
3epoMP5Phosphomethylpyrimidine synthase/0.445
1dz6CAMCamphor 5-monooxygenase1.14.15.10.444
4du82P0Mevalonate diphosphate decarboxylase/0.440