1.800 Å
X-ray
2010-06-09
Name: | Uncharacterized protein |
---|---|
ID: | Q8KRB7_STRCL |
AC: | Q8KRB7 |
Organism: | Streptomyces clavuligerus |
Reign: | Bacteria |
TaxID: | 1901 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 17.499 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 28 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 5 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.393 | 995.625 |
% Hydrophobic | % Polar |
---|---|
52.88 | 47.12 |
According to VolSite |
HET Code: | J01 |
---|---|
Formula: | C8H8NO5 |
Molecular weight: | 198.153 g/mol |
DrugBank ID: | DB00766 |
Buried Surface Area: | 65.2 % |
Polar Surface area: | 89.9 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 5 |
H-Bond Donors: | 1 |
Rings: | 2 |
Aromatic rings: | 0 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 2 |
X | Y | Z |
---|---|---|
-12.0178 | 42.6019 | 55.482 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C7 | CB | SER- 173 | 4.07 | 0 | Hydrophobic |
C7 | CB | SER- 234 | 3.96 | 0 | Hydrophobic |
O3 | OG | SER- 234 | 3.12 | 175.15 | H-Bond (Protein Donor) |
O4 | OH | TYR- 359 | 2.66 | 170.75 | H-Bond (Protein Donor) |
C7 | CB | ALA- 376 | 4.11 | 0 | Hydrophobic |
C4 | CB | ALA- 378 | 4.26 | 0 | Hydrophobic |
C4 | SD | MET- 383 | 4.08 | 0 | Hydrophobic |
C4 | CZ | PHE- 385 | 4.48 | 0 | Hydrophobic |
O4 | NH2 | ARG- 418 | 2.59 | 154.57 | H-Bond (Protein Donor) |
O4 | NH1 | ARG- 418 | 3.43 | 122.14 | H-Bond (Protein Donor) |
O4 | CZ | ARG- 418 | 3.41 | 0 | Ionic (Protein Cationic) |
O3 | O | HOH- 2159 | 2.81 | 179.97 | H-Bond (Protein Donor) |
O5 | O | HOH- 2285 | 3.01 | 156.9 | H-Bond (Protein Donor) |
O5 | O | HOH- 2325 | 2.74 | 135.35 | H-Bond (Protein Donor) |