1.800 Å
X-ray
2010-06-09
| Name: | Uncharacterized protein |
|---|---|
| ID: | Q8KRB7_STRCL |
| AC: | Q8KRB7 |
| Organism: | Streptomyces clavuligerus |
| Reign: | Bacteria |
| TaxID: | 1901 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 17.499 |
|---|---|
| Number of residues: | 33 |
| Including | |
| Standard Amino Acids: | 28 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 5 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.393 | 995.625 |
| % Hydrophobic | % Polar |
|---|---|
| 52.88 | 47.12 |
| According to VolSite | |

| HET Code: | J01 |
|---|---|
| Formula: | C8H8NO5 |
| Molecular weight: | 198.153 g/mol |
| DrugBank ID: | DB00766 |
| Buried Surface Area: | 65.2 % |
| Polar Surface area: | 89.9 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 5 |
| H-Bond Donors: | 1 |
| Rings: | 2 |
| Aromatic rings: | 0 |
| Anionic atoms: | 1 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| -12.0178 | 42.6019 | 55.482 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| C7 | CB | SER- 173 | 4.07 | 0 | Hydrophobic |
| C7 | CB | SER- 234 | 3.96 | 0 | Hydrophobic |
| O3 | OG | SER- 234 | 3.12 | 175.15 | H-Bond (Protein Donor) |
| O4 | OH | TYR- 359 | 2.66 | 170.75 | H-Bond (Protein Donor) |
| C7 | CB | ALA- 376 | 4.11 | 0 | Hydrophobic |
| C4 | CB | ALA- 378 | 4.26 | 0 | Hydrophobic |
| C4 | SD | MET- 383 | 4.08 | 0 | Hydrophobic |
| C4 | CZ | PHE- 385 | 4.48 | 0 | Hydrophobic |
| O4 | NH2 | ARG- 418 | 2.59 | 154.57 | H-Bond (Protein Donor) |
| O4 | NH1 | ARG- 418 | 3.43 | 122.14 | H-Bond (Protein Donor) |
| O4 | CZ | ARG- 418 | 3.41 | 0 | Ionic (Protein Cationic) |
| O3 | O | HOH- 2159 | 2.81 | 179.97 | H-Bond (Protein Donor) |
| O5 | O | HOH- 2285 | 3.01 | 156.9 | H-Bond (Protein Donor) |
| O5 | O | HOH- 2325 | 2.74 | 135.35 | H-Bond (Protein Donor) |