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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.642
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.636
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.623
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.613
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.613
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.593
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.479
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.477
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.477
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.471
1dxoFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.466
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.466
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.464
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.450