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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2qe2452Polyprotein

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2qe2452Polyprotein/1.000
3ska053Genome polyprotein2.7.7.480.599
3gnvXNZGenome polyprotein2.7.7.480.569
3csoXNIGenome polyprotein2.7.7.480.564
3u4o08EGenome polyprotein2.7.7.480.564
3ske054Genome polyprotein2.7.7.480.559
3hkyIX6Genome polyprotein2.7.7.480.550
3uph0C1Genome polyprotein2.7.7.480.545
2gc8885Polyprotein/0.544
4mk728OGenome polyprotein2.7.7.480.540
4ih61EPGenome polyprotein2.7.7.480.538
3tyvHI3Genome polyprotein2.7.7.480.537
4mkb28VGenome polyprotein2.7.7.480.534
3br9DEYGenome polyprotein2.7.7.480.532
4mka2AYGenome polyprotein2.7.7.480.530
3g86T18Genome polyprotein2.7.7.480.526
3d28B34Genome polyprotein2.7.7.480.522
3d5m4MSGenome polyprotein2.7.7.480.506
3u4r08FGenome polyprotein2.7.7.480.505
3bsc2PDGenome polyprotein2.7.7.480.504
3hkwIX6Genome polyprotein2.7.7.480.503
2yoj8Y6Genome polyprotein2.7.7.480.500
3igvB80Genome polyprotein2.7.7.480.500
4mk928RGenome polyprotein2.7.7.480.500
3gynB42Genome polyprotein2.7.7.480.495
3h2lYAKGenome polyprotein2.7.7.480.477
3h59H59Genome polyprotein2.7.7.480.476
2g25TDKPyruvate dehydrogenase E1 component1.2.4.10.442