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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2owvSAHDiphthine synthase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2owvSAHDiphthine synthase/1.000
2dekSAHDiphthine synthase/0.798
2e16SAHDiphthine synthase/0.765
2eglSAHDiphthine synthase/0.757
2e8hSAHDiphthine synthase/0.755
2e08SAHDiphthine synthase/0.744
2ek7SAHDiphthine synthase/0.718
2dxwSAHDiphthine synthase/0.714
2p6lSAHDiphthine synthase/0.711
2egbSAHDiphthine synthase/0.705
2dxvSAHDiphthine synthase/0.694
2en5SAHDiphthine synthase/0.694
2owuSAHDiphthine synthase/0.677
2emrSAHDiphthine synthase/0.676
2egsSAHDiphthine synthase/0.675
2ejjSAHDiphthine synthase/0.675
2e8sSAHDiphthine synthase/0.672
2eh5SAHDiphthine synthase/0.669
1vceSAHDiphthine synthase/0.668
2e8qSAHDiphthine synthase/0.662
2ehlSAHDiphthine synthase/0.657
2p6dSAHDiphthine synthase/0.654
2owkSAHDiphthine synthase/0.652
2eniSAHDiphthine synthase/0.651
2p6iSAHDiphthine synthase/0.651
2eeqSAHDiphthine synthase/0.650
2dv4SAHDiphthine synthase/0.649
2el0SAHDiphthine synthase/0.648
2dsgSAHDiphthine synthase/0.647
2pb4SAHDiphthine synthase/0.640
2pcmSAHDiphthine synthase/0.640
2e07SAHDiphthine synthase/0.639
2z6rSAHDiphthine synthase/0.638
2ejkSAHDiphthine synthase/0.636
2p2xSAHDiphthine synthase/0.635
1wngSAHDiphthine synthase/0.633
2ed5SAHDiphthine synthase/0.633
2ek2SAHDiphthine synthase/0.632
2dv7SAHDiphthine synthase/0.629
2eh2SAHDiphthine synthase/0.629
2ekaSAHDiphthine synthase/0.629
2emuSAHDiphthine synthase/0.629
2p6kSAHDiphthine synthase/0.629
2pchSAHDiphthine synthase/0.628
2hr8SAHDiphthine synthase/0.627
2pciSAHDiphthine synthase/0.625
2e17SAHDiphthine synthase/0.615
2eleSAHDiphthine synthase/0.615
2huqSAHDiphthine synthase/0.608
2dv3SAHDiphthine synthase/0.606
2e15SAHDiphthine synthase/0.600
2huxSAHDiphthine synthase/0.600
2pb6SAHDiphthine synthase/0.599
2p5fSAHDiphthine synthase/0.597
2dshSAHDiphthine synthase/0.591
2owfSAHDiphthine synthase/0.584
2e7rSAHDiphthine synthase/0.581
2p5cSAHDiphthine synthase/0.579
2e4nSAHDiphthine synthase/0.578
2ed3SAHDiphthine synthase/0.576
2el3SAHDiphthine synthase/0.576
2eldSAHDiphthine synthase/0.571
2ek4SAHDiphthine synthase/0.567
2eh4SAHDiphthine synthase/0.565
2pckSAHDiphthine synthase/0.565
2ek3SAHDiphthine synthase/0.563
2dsiSAHDiphthine synthase/0.559
2pcgSAHDiphthine synthase/0.558
2huvSAHDiphthine synthase/0.550
2hutSAHDiphthine synthase/0.548
2dxxSAHDiphthine synthase/0.546
2pb5SAHDiphthine synthase/0.546
2e8rSAHDiphthine synthase/0.542
2pcaSAHDiphthine synthase/0.535
2p9dSAHDiphthine synthase/0.527
2dv5SAHDiphthine synthase/0.517
2ejzSAHDiphthine synthase/0.516
2owgSAHDiphthine synthase/0.483
3tneRITCandidapepsin-13.4.23.240.462
1phhFADp-hydroxybenzoate hydroxylase/0.446
4ougLP5Peptidoglycan recognition protein 1/0.446
3r6sCMPCRP-like cAMP-activated global transcriptional regulator/0.445
1tqf32PBeta-secretase 13.4.23.460.444
2gjnFMNNitronate monooxygenase1.13.12.160.444
3lqfNADGalactitol dehydrogenase/0.443
3qt62P0Mevalonate diphosphate decarboxylase/0.443
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.442
2ztvNADD(-)-3-hydroxybutyrate dehydrogenase/0.442
2gjlFMNNitronate monooxygenase1.13.12.160.441
3ijoB4DGlutamate receptor 2/0.441
4q71FADBifunctional protein PutA/0.441
1xe55FEPlasmepsin-23.4.23.390.440
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.440