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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2opmNI9Farnesyl pyrophosphate synthase2.5.1.10

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2opmNI9Farnesyl pyrophosphate synthase2.5.1.101.000
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.547
4q23RISFarnesyl pyrophosphate synthase2.5.1.100.536
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.504
2f94BFQFarnesyl pyrophosphate synthase2.5.1.100.492
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.492
3ryeUNRFarnesyl pyrophosphate synthase2.5.1.100.480
2opnSUFFarnesyl pyrophosphate synthase2.5.1.100.464
3ez3ZOLFarnesyl pyrophosphate synthase, putative/0.456
3rywK9HFarnesyl pyrophosphate synthase, putative/0.450
4nkeIPEFarnesyl pyrophosphate synthase2.5.1.100.440