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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2oo7AP5Adenylate kinase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2oo7AP5Adenylate kinase/1.000
2eu8AP5Adenylate kinase/0.768
2qajAP5Adenylate kinase/0.610
4mkgAP5Adenylate kinase/0.599
4mkhAP5Adenylate kinase/0.578
1zioAP5Adenylate kinase/0.558
4w5jAP5Adenylate kinase/0.558
3hpqAP5Adenylate kinase/0.549
4jloADPAdenylate kinase/0.543
3dkvAP5Adenylate kinase/0.538
4jl6ADPAdenylate kinase/0.535
4qbiAP5Adenylate kinase/0.535
4typAP5Adenylate kinase/0.535
1e4yAP5Adenylate kinase/0.530
4cf7ADPAdenylate kinase/0.528
1dvrATFAdenylate kinase/0.514
1p3jAP5Adenylate kinase/0.511
2osbAP5Adenylate kinase/0.511
4nu0AP5Adenylate kinase/0.507
4tyqAP5Adenylate kinase/0.493
4jl5ADPAdenylate kinase/0.490
1akeAP5Adenylate kinase/0.484
1ankANPAdenylate kinase/0.476
4qbgAP5Adenylate kinase/0.473
3tlxADPAdenylate kinase 2/0.472
4jldADPAdenylate kinase/0.468
4jkyADPAdenylate kinase/0.466
4qbhAP5Adenylate kinase/0.455
4x8oAP5Adenylate kinase/0.447
3o03NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase)/0.444
3lqfNADGalactitol dehydrogenase/0.441
4x8lAP5Adenylate kinase/0.441