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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2iskFNR5,6-dimethylbenzimidazole synthase1.13.11.79

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2iskFNR5,6-dimethylbenzimidazole synthase1.13.11.791.000
2islFNR5,6-dimethylbenzimidazole synthase1.13.11.790.646
2isjFMN5,6-dimethylbenzimidazole synthase1.13.11.790.570
3eo8FMNPutative nitroreductase/0.479
4prxADPDNA gyrase subunit B/0.463
4z17PEPEnolase/0.450
4wucANPDNA gyrase subunit B/0.449
3koqFMNPutative nitroreductase/0.448
4a5lNDPThioredoxin reductase/0.445
3e39FMNNitroreductase/0.440