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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2h9iEADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.9

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2h9iEADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.91.000
4trnNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.632
2aqiNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.580
2aqkNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.571
2iebZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.561
4zjuNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.531
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.499
2b37NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.490
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.480
3of2NADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.479
2aqhNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.462
5koiNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.457
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.451
2gjlFMNNitronate monooxygenase1.13.12.160.447
3oeyNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.446