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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2h3dNMNNicotinamide phosphoribosyltransferase2.4.2.12

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2h3dNMNNicotinamide phosphoribosyltransferase2.4.2.121.000
4m6q20TNicotinamide phosphoribosyltransferase2.4.2.120.558
4m6p20RNicotinamide phosphoribosyltransferase2.4.2.120.537
4lwwLWWNicotinamide phosphoribosyltransferase2.4.2.120.528
2g96NMNNicotinamide phosphoribosyltransferase2.4.2.120.515
4kfp1R7Nicotinamide phosphoribosyltransferase2.4.2.120.486
4lva20MNicotinamide phosphoribosyltransferase2.4.2.120.485
2gvjDGBNicotinamide phosphoribosyltransferase2.4.2.120.484
4ltsLTSNicotinamide phosphoribosyltransferase2.4.2.120.482
4o281QSNicotinamide phosphoribosyltransferase2.4.2.120.479
2gvgNMNNicotinamide phosphoribosyltransferase2.4.2.120.477
4jr51LSNicotinamide phosphoribosyltransferase2.4.2.120.465
4o1dDGBNicotinamide phosphoribosyltransferase2.4.2.120.454
4kfo1QSNicotinamide phosphoribosyltransferase2.4.2.120.450
4kfn1QRNicotinamide phosphoribosyltransferase2.4.2.120.446