sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2f3m	GTD	Glutathione S-transferase Mu 1	2.5.1.18

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
2f3m	GTD	Glutathione S-transferase Mu 1	2.5.1.18	1.000
3gst	GPR	Glutathione S-transferase Mu 1	2.5.1.18	0.537
2gst	GPS	Glutathione S-transferase Mu 1	2.5.1.18	0.535
6gsw	GPS	Glutathione S-transferase Mu 1	2.5.1.18	0.528
1hnc	GDN	Glutathione S-transferase Mu 2	2.5.1.18	0.486
6gsx	GPS	Glutathione S-transferase Mu 1	2.5.1.18	0.477
2c4j	GSO	Glutathione S-transferase Mu 2	2.5.1.18	0.462
1kbo	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.445
1tu8	GTX	Glutathione S-transferase 2	2.5.1.18	0.440