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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2du8FADD-amino-acid oxidase1.4.3.3

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2du8FADD-amino-acid oxidase1.4.3.31.000
2e48FADD-amino-acid oxidase1.4.3.30.618
1kifFADD-amino-acid oxidase1.4.3.30.564
3if9FADGlycine oxidase1.4.3.190.534
3znpFADD-amino-acid oxidase1.4.3.30.531
1ryiFADGlycine oxidase1.4.3.190.524
1ng3FADGlycine oxidase1.4.3.190.500
1ng4FADGlycine oxidase1.4.3.190.498
3vqrFADPutative oxidoreductase/0.478
4yshFADGlycine oxidase/0.466
2rgoFADAlpha-Glycerophosphate Oxidase/0.454
3sglFADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC/0.441