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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2dr8CTPCCA-adding enzyme2.7.7.72

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2dr8CTPCCA-adding enzyme2.7.7.721.000
3ovbATPCCA-adding enzyme2.7.7.720.607
2draATPCCA-adding enzyme2.7.7.720.582
2zh6ATPCCA-adding enzyme2.7.7.720.582
3ovaAPCCCA-adding enzyme2.7.7.720.574
3ov7ATPCCA-adding enzyme2.7.7.720.548
1r8cUTPCCA-adding enzyme2.7.7.720.538
3ovsCTPCCA-adding enzyme2.7.7.720.534
1r89CTPCCA-adding enzyme2.7.7.720.532