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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2cndFADNitrate reductase [NADH]1.7.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2cndFADNitrate reductase [NADH]1.7.1.11.000
1cnfFADNitrate reductase [NADH]1.7.1.10.533
1qx4FADNADH-cytochrome b5 reductase 31.6.2.20.514
1i7pFADNADH-cytochrome b5 reductase 31.6.2.20.506
1umkFADNADH-cytochrome b5 reductase 31.6.2.20.499
1ndhFADNADH-cytochrome b5 reductase 31.6.2.20.491
1cneFADNitrate reductase [NADH]1.7.1.10.470
1x1bSAHC-20 methyltransferase/0.454
3wqmB29Diterpene synthase3.1.7.80.445
2g1y5IGRenin3.4.23.150.444