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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c9ePIDPeridinin-chlorophyll a protein, high-salt form

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2c9ePIDPeridinin-chlorophyll a protein, high-salt form/1.000
1blzACVIsopenicillin N synthase1.21.3.10.473
3zoiM2WIsopenicillin N synthase1.21.3.10.466
3hl0NADMaleylacetate reductase/0.456
2q9fC3SCholesterol 24-hydroxylase/0.455
1hb1OCVIsopenicillin N synthase1.21.3.10.453
4r20AERCytochrome P450 family 17 polypeptide 2/0.451
4eplJAIJasmonic acid-amido synthetase JAR16.3.20.448
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.447
1w06W05Isopenicillin N synthase1.21.3.10.444
1xl8152Peroxisomal carnitine O-octanoyltransferase2.3.1.1370.444
2bu9HFVIsopenicillin N synthase1.21.3.10.444
1q5mNDPProstaglandin-E(2) 9-reductase1.1.1.1890.443
3a1l2CCCytochrome P450/0.443
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.443
2z3uCRRCytochrome P450/0.442
2jb4A14Isopenicillin N synthase1.21.3.10.441
3p99LNPLanosterol 14-alpha-demethylase/0.441
3own3OWRenin3.4.23.150.440
4bb3KKAIsopenicillin N synthase1.21.3.10.440
4bb6HD1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.440
4dvq1CACytochrome P450 11B2, mitochondrial1.14.15.40.440