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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2c20NADUDP-glucose 4-epimerase

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
2c20NADUDP-glucose 4-epimerase/1.000
2p5uNADUDP-glucose 4-epimerase/0.474
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.470
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.451
2q1wNADPutative nucleotide sugar epimerase/ dehydratase/0.450
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.447
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.443