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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1yrsADPKinesin-like protein KIF11

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1yrsADPKinesin-like protein KIF11/1.000
2x2rADPKinesin-like protein KIF11/0.623
2pg2ADPKinesin-like protein KIF11/0.521
2q2yADPKinesin-like protein KIF11/0.494
3hqdANPKinesin-like protein KIF11/0.490
4ap0ADPKinesin-like protein KIF11/0.455
2g1qADPKinesin-like protein KIF11/0.450
1n6mADPProtein claret segregational/0.449
3cobADPKinesin heavy chain-like protein/0.449
2y65ADPKinesin heavy chain/0.440