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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.29

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.291.000
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.290.606
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.570
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.561
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.560
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.559
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.557
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.535
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.532
2z1xPRFQueuine tRNA-ribosyltransferase2.4.2.290.515
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.515
2potGUNQueuine tRNA-ribosyltransferase2.4.2.290.513
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.513
1q65BHBQueuine tRNA-ribosyltransferase2.4.2.290.509
1ozqPRFQueuine tRNA-ribosyltransferase2.4.2.290.505
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.488
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.486
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.484
1q4wDQUQueuine tRNA-ribosyltransferase2.4.2.290.483
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.483
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.477
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.456
4fgcPQ0NADPH-dependent 7-cyano-7-deazaguanine reductase1.7.1.130.452
1p0ePRFQueuine tRNA-ribosyltransferase2.4.2.290.449
4ug7H4BNitric oxide synthase oxygenase1.14.13.1650.448
3zk5Z18Cytochrome P450 monooxygenase PikC/0.447
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.447
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.446
4ug5H4BNitric oxide synthase oxygenase1.14.13.1650.443
4ugaH4BNitric oxide synthase oxygenase1.14.13.1650.443
1u3dFADCryptochrome-1/0.442
1f4fTP3Thymidylate synthase/0.441