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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1u31NDPNAD(P) transhydrogenase, mitochondrial1.6.1.2

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1u31NDPNAD(P) transhydrogenase, mitochondrial1.6.1.21.000
1pt9TAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.769
1djlNAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.645
1d4oNAPNAD(P) transhydrogenase, mitochondrial/0.616
1pnoNAPNAD(P) transhydrogenase subunit beta1.6.1.20.543
2fr8NAPNAD(P) transhydrogenase subunit beta1.6.1.20.501
1ptjNAPNAD(P) transhydrogenase subunit beta1.6.1.20.475
1nm5NAPNAD(P) transhydrogenase subunit beta1.6.1.20.469
4j1tNAPNAD(P) transhydrogenase subunit beta/0.451