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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1sb8UD2WbpP

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1sb8UD2WbpP/1.000
1sb9UPGWbpP/0.633
3ruhUD6UDP-N-acetylglucosamine 4-epimerase/0.615
3lu1UD2UDP-N-acetylglucosamine 4-epimerase/0.600
3rucUD2UDP-N-acetylglucosamine 4-epimerase/0.568
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.526
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.524
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.513
3ru9NADUDP-N-acetylglucosamine 4-epimerase/0.511
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.509
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.498
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.493
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.485
4zrnUPGUDP-glucose 4-epimerase, putative/0.474
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.473