Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1s9eADBGag-Pol polyprotein2.7.7.49

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1s9eADBGag-Pol polyprotein2.7.7.491.000
1s6qTPBGag-Pol polyprotein2.7.7.490.520
1c1bGCAGag-Pol polyprotein2.7.7.490.519
3ffi3OBGag-Pol polyprotein2.7.7.490.514
4i7fNVEGag-Pol polyprotein2.7.7.490.496
1hnvTBOGag-Pol polyprotein2.7.7.490.492
2hndNVPGag-Pol polyprotein2.7.7.490.489
1fk9EFZGag-Pol polyprotein2.7.7.490.487
1rt2TNKGag-Pol polyprotein2.7.7.490.480
1ikvEFZGag-Pol polyprotein2.7.7.490.476
2ze2T27Gag-Pol polyprotein2.7.7.490.476
1tvrTB9Gag-Pol polyprotein2.7.7.490.462
1tl1H18Gag-Pol polyprotein2.7.7.490.458
1vruAAPGag-Pol polyprotein2.7.7.490.457
3i0rRT3Gag-Pol polyprotein2.7.7.490.457
4i2q1BTGag-Pol polyprotein2.7.7.490.457
1ikwEFZGag-Pol polyprotein2.7.7.490.455
2jleI15Reverse transcriptase/RNaseH/0.455
2rf2MRXGag-Pol polyprotein2.7.7.490.455
3m8qDJZGag-Pol polyprotein2.7.7.490.454
1klmSPPGag-Pol polyprotein2.7.7.490.453
4i2pG73Gag-Pol polyprotein2.7.7.490.452
1hpzAAPGag-Pol polyprotein2.7.7.490.451
1tkzH16Gag-Pol polyprotein2.7.7.490.445
1ikxPNUGag-Pol polyprotein2.7.7.490.444
3meeT27Gag-Pol polyprotein2.7.7.490.444
4id5T27Gag-Pol polyprotein2.7.7.490.444
2zd1T27Gag-Pol polyprotein2.7.7.490.443
1revTB9Gag-Pol polyprotein2.7.7.490.442
4kko1REGag-Pol polyprotein2.7.7.490.441
3is9AC7Gag-Pol polyprotein2.7.7.490.440