sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1ryd	NDP	Glucose--fructose oxidoreductase	1.1.99.28

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1ryd	NDP	Glucose--fructose oxidoreductase	1.1.99.28	1.000
1h6b	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.598
1h6c	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.574
1h6a	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.569
1rye	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.565
1evj	NAD	Glucose--fructose oxidoreductase	1.1.99.28	0.554
1h6d	NDP	Glucose--fructose oxidoreductase	1.1.99.28	0.496
5a04	NDP	Glucose-fructose oxidoreductase	/	0.454
5a02	NAP	Glucose-fructose oxidoreductase	/	0.452
5a05	NDP	Glucose-fructose oxidoreductase	/	0.448