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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qlhNADAlcohol dehydrogenase E chain1.1.1.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1qlhNADAlcohol dehydrogenase E chain1.1.1.11.000
1adfTADAlcohol dehydrogenase E chain1.1.1.10.572
1a72PADAlcohol dehydrogenase E chain1.1.1.10.571
5adhAPRAlcohol dehydrogenase E chain1.1.1.10.538
1e3lNADAlcohol dehydrogenase 41.1.1.10.470
1ju9NADAlcohol dehydrogenase E chain1.1.1.10.461
1e3eNAIAlcohol dehydrogenase 41.1.1.10.460
4ng5NAJAlcohol dehydrogenase E chain1.1.1.10.460
5kjcNAJAlcohol dehydrogenase E chain1.1.1.10.454
1hf3NADAlcohol dehydrogenase E chain1.1.1.10.451
4xd2NAIAlcohol dehydrogenase E chain1.1.1.10.451
3oq6NAJAlcohol dehydrogenase E chain1.1.1.10.450
5kjeNAJAlcohol dehydrogenase E chain1.1.1.10.447