sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1nqv	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1nqv	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	1.000
1nqu	RDL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.591
1nqw	5YL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.499
4kq6	DLZ	6,7-dimethyl-8-ribityllumazine synthase	/	0.497
1kyv	RBF	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.481
1kyx	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.471
2a59	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.468
2a57	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.467
1nqx	RLP	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.452
1ejb	INJ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.448