sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Distribution of Cavity similarities measured by Shaper

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Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1ngd	ADP	Heat shock cognate 71 kDa protein

Complex with similar cavities

PDB ID	HET	Uniprot Name	EC Number	Cavity Similarity	Align
1ngd	ADP	Heat shock cognate 71 kDa protein	/	1.000
1ngh	ATP	Heat shock cognate 71 kDa protein	/	0.684
1ngc	ADP	Heat shock cognate 71 kDa protein	/	0.679
1ngb	ADP	Heat shock cognate 71 kDa protein	/	0.667
3hsc	ADP	Heat shock cognate 71 kDa protein	/	0.652
1ngi	ANP	Heat shock cognate 71 kDa protein	/	0.639
1atr	ADP	Heat shock cognate 71 kDa protein	/	0.612
1ats	ADP	Heat shock cognate 71 kDa protein	/	0.540
2qwr	ANP	Heat shock cognate 71 kDa protein	/	0.511
2qwq	ADP	Heat shock cognate 71 kDa protein	/	0.509
1ngj	ANP	Heat shock cognate 71 kDa protein	/	0.504
2qwn	ADP	Heat shock cognate 71 kDa protein	/	0.500
3ldp	3P1	78 kDa glucose-regulated protein	/	0.481
5f2r	ACP	78 kDa glucose-regulated protein	/	0.465
3ldl	ATP	78 kDa glucose-regulated protein	/	0.464