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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1llwFMNFerredoxin-dependent glutamate synthase 21.4.7.1

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1llwFMNFerredoxin-dependent glutamate synthase 21.4.7.11.000
1llzFMNFerredoxin-dependent glutamate synthase 21.4.7.10.672
1lm1FMNFerredoxin-dependent glutamate synthase 21.4.7.10.620
1ofdFMNFerredoxin-dependent glutamate synthase 21.4.7.10.557
1ofeFMNFerredoxin-dependent glutamate synthase 21.4.7.10.541
1ea0FMNGlutamate synthase [NADPH] large chain1.4.1.130.478
3junAKDPhenazine biosynthesis protein A/B/0.447
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.446
3nbvANPKetohexokinase/0.440