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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Cavity similarities measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Cavities are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299

Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kquBR4Phospholipase A2, membrane associated

Complex with similar cavities

PDB ID HET Uniprot Name EC Number Cavity
Similarity		 Align
1kquBR4Phospholipase A2, membrane associated/1.000
1db48INPhospholipase A2, membrane associated/0.552
1db56INPhospholipase A2, membrane associated/0.547
5p2pDHGPhospholipase A2, major isoenzyme3.1.1.40.527
1kvoOAPPhospholipase A2, membrane associated/0.526
3u8dU8DPhospholipase A2, membrane associated/0.526
1dcyI3NPhospholipase A2, membrane associated/0.521
4qemHC4Phospholipase A2 VRV-PL-VIIIa/0.493
2b96ANNPhospholipase A23.1.1.40.450
4qerSTLPhospholipase A2 VRV-PL-VIIIa/0.450
3njuANNAcidic phospholipase A2 33.1.1.40.447
2oliIOPBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.443
3jypNADQuinate/shikimate dehydrogenase (NAD(+))/0.440